;+
; PROCEDURE: 
;    tplot2cdf_save_vars(cdf_structure,new_cdf_name)
; PURPOSE:  
;    To dump data and metadata from an IDL structure into a CDF file.
;		 This is a fork of the cdf_load_vars.pro!
;					
; INPUTS:   
;     cdf_structure : IDL structure defined by cdf_load_vars.pro
;	    new_cdf_name  : a string to name the new CDF file with
;	    
;	    compress_cdf: if this is set, the produced cdf is compressed
;	    cdfconvert: (optional) location of cdfconvert utility (eg. /usr/local/pkg/cdf-3.6.1_CentOS-6.6/bin/cdfconvert)
;	    cdfparams: (optional) cdf compression parameters
;	    cdf_compress_error: (optional) return string for compression errors 
;	    cdf_tmp_dir: (optional) compression uses this directory for temporary files
; EXAMPLE:  
;     cdf_save_vars(cdfi,'newcdf.cdf')
;
;Note: To use this routine you must have the CDF_EPOCH/CDF_EPOCH16 bug patch on your IDL6.3
;and if you are using Solaris you need to be in 32-bit mode NOT 64-bit (ie, idl -32)
;
;CREATED BY:
;  Alexander Drozdov
;
; $LastChangedBy: egrimes $
; $LastChangedDate: 2018-12-13 08:16:04 -0800 (Thu, 13 Dec 2018) $
; $LastChangedRevision: 26321 $
; $URL: svn+ssh://thmsvn@ambrosia.ssl.berkeley.edu/repos/spdsoft/tags/spedas_3_2/general/CDF/tplot2cdf_save_vars.pro $
;-

pro tplot2cdf_save_vars, cdf_structure, new_cdf_name, compress_cdf=compress_cdf, cdfconvert=cdfconvert, cdfparams=cdfparams, cdf_compress_error=cdf_compress_error, cdf_tmp_dir=cdf_tmp_dir

compile_opt idl2

;check input
;-----------

if not keyword_set(cdf_structure) then begin
  print, "No valid input."
  print, "Example: dummy=cdf_save_vars(idl_structure,'newcdf.cdf')"
  return
endif

if not keyword_set(new_cdf_name) then begin
  print, "Need name for output CDF."
  print, "Example: dummy=cdf_save_vars(idl_structure,'newcdf.cdf')"
  return
endif

;create CDF file
;---------------

file=new_cdf_name
; cdf_parameters=create_struct(cdf_structure.inq.encoding,1,cdf_structure.inq.decoding,1,cdf_structure.inq.majority,1)
id=cdf_create(file,/clobber,/single_file,/COL_MAJOR) ; , ,_extra=cdf_parameters)
dprint,'Open CDF file ' + file  + ' (id :' + string(id) + ')',dlevel=2  

; Compression
; -----------
if keyword_set(compress_cdf) then CDF_COMPRESSION,id,SET_COMPRESSION=compress_cdf 

;add global attributes
;---------------------

ga_names=tag_names(cdf_structure.g_attributes)

;make names ISTP compliant
ga=strupcase(strmid(ga_names,0,1))+strlowcase(strmid(ga_names,1))
index=where(ga eq 'Text' or ga eq 'Title' or ga eq 'Mods' or ga eq 'Link_text' or ga eq 'Link_title' or ga eq 'Http_link')
if index[0] ne -1 then ga[index]=strupcase(ga[index])
index=where(ga eq 'Pi_name' or ga eq 'Pi_affiliation')
if index[0] ne -1 then ga[index]=strupcase(strmid(ga_names[index],0,2))+strlowcase(strmid(ga_names[index],2))
index=where(ga eq 'Adid_ref')
if index[0] ne -1 then ga[index]=strupcase(strmid(ga_names[index],0,4))+strlowcase(strmid(ga_names[index],4))
ga_names_istp_compliant=ga

;update logical_file_id (these checks are copied from write_data_to_cdf in IDLmakecdf)
  logical_file_id = file
  period = rstrpos(logical_file_id, '.') ;find position of last '.'
  if (period gt -1) then logical_file_id = strmid(file,0,period)
  slash = rstrpos(logical_file_id, '/') ;find position of last '/'
  if (slash gt -1) then logical_file_id = strmid(logical_file_id,slash+1)
  cdf_structure.g_attributes.logical_file_id=logical_file_id

for i=0,n_elements(ga_names_istp_compliant)-1 do begin

  global_dummy = cdf_attcreate(id, ga_names_istp_compliant[i], /global_scope)
  n_atts = n_elements(cdf_structure.g_attributes.(i))
  for j = 0, n_atts-1 do $
    cdf_attput, id, ga_names_istp_compliant[i], j, $
    cdf_structure.g_attributes.(i)[j]
endfor  ; i


;add variables and their data and attributes
;-------------------------------------------

for i=0,cdf_structure.nv-1 do begin
  var_name = strjoin(strsplit(cdf_structure.vars[i].name, '-', /extract), '_')

	;create variable
	;---------------
	
	
	if (cdf_structure.vars[i].recvary eq 0) then recvary='rec_novary' else recvary='rec_vary'	
	
	if (ptr_valid(cdf_structure.vars[i].dataptr)) then begin	
	   data_dimen = dimen(*cdf_structure.vars[i].dataptr)	   
	   data_ndimen = ndimen(*cdf_structure.vars[i].dataptr)
	   	   
	   if cdf_structure.vars[i].recvary eq 1 then begin
	     if data_ndimen gt 1 then begin 
	       data_dimvary = intarr(data_ndimen-1)+1
	       data_dimen = data_dimen[1:*]	       
	     endif else begin 
	       data_dimvary=1
	       data_dimen = 0
	     endelse	     
	   endif else begin ; no recvary should be only 1d supporting variables
	     data_dimvary = intarr(data_ndimen)+1
	     ; data_dimen = data_dimen ; No change here	     	     
	   endelse
 endif else begin
  data_dimen=0
  data_nimen=0
  dprint,'Warning: variable ' + var_name + ' has no valid data pointer',dlevel=2   
 endelse
	 
	;
	; == We don't process the situation when we have no valid data pointer ==
	;   
	;endif else begin ; I'm not sure what case do we have when there is no valid data pointer
	;   str_element,cdf_structure.vars[i],'d',success=success
	;   if success eq 1 then begin
	;      index=where(cdf_structure.vars[i].d gt 0)
	;      if index(0) ne -1 then data_dimen=cdf_structure.vars[i].d(index) else data_dimen=0
	;   endif else data_dimen=0
	;endelse
	
	
	if (cdf_structure.vars[i].datatype eq 'CDF_CHAR' or cdf_structure.vars[i].datatype eq 'CDF_UCHAR') then begin
	   if (ptr_valid(cdf_structure.vars[i].dataptr)) then begin
	      numelem=max(strlen(*cdf_structure.vars[i].dataptr))
	      *cdf_structure.vars[i].dataptr=string(*cdf_structure.vars[i].dataptr,format='(a'+string(numelem)+')')
	   endif else numelem=1
	endif else numelem=1
	
	if (cdf_structure.vars[i].datatype eq 'CDF_EPOCH16') then datatype='CDF_LONG_EPOCH' else datatype=cdf_structure.vars[i].datatype	
	
	var_parameters=create_struct(datatype,1,recvary,1,'numelem',numelem)
	
	if (data_ndimen eq 0) or (data_ndimen eq 1 and cdf_structure.vars[i].recvary eq 1) then begin
   	 ; Scalar or 1d recvary 
	   dummy=cdf_varcreate(id,var_name,_extra=var_parameters,/zvariable)
	endif else begin
	   dummy=cdf_varcreate(id,var_name,data_dimvary,dim=data_dimen,_extra=var_parameters,/zvariable)
	endelse
		
	
	;add variable attributes
	;-----------------------
	
	va=*cdf_structure.vars[i].attrptr
	va_names=tag_names(va)

	for j=0,n_elements(va_names)-1 do begin
	
		att_exists=cdf_attexists(id,va_names[j],/zvariable)
		if (att_exists eq 0) then dummy=cdf_attcreate(id,va_names[j],/variable_scope)
		if ( cdf_structure.vars[i].datatype eq 'CDF_EPOCH' or cdf_structure.vars[i].datatype eq 'CDF_TIME_TT2000' ) && ((va_names[j] eq 'FILLVAL') || (va_names[j] eq 'VALIDMIN') || (va_names[j] eq 'VALIDMAX')) then begin
		  cdf_attput,id,va_names[j],var_name,va.(j),/zvariable,/cdf_epoch
		endif else cdf_attput,id,va_names[j],var_name,va.(j),/zvariable
			
	endfor  ; j
	
	
	;add variable data
	;-----------------
	; print,i
		
	if (ptr_valid(cdf_structure.vars[i].dataptr)) then begin
		vd=*cdf_structure.vars[i].dataptr
		if (data_ndimen gt 1 and recvary eq 'rec_vary') then begin			
			;num_dimen=dimen(data_dimen)
			;transshift=shift((findgen(num_dimen+1)),-1)
			;vd=transpose(vd,transshift)
			;transshift=indgen(ndimen(vd))
			;transshift[1] = 0
			;transshift[0] = 1
			;vd=transpose(vd,transshift)			
			transshift=shift(indgen(data_ndimen),-1)
			vd=transpose(vd,transshift)
		endif
		
		cdf_varput,id,var_name,vd,/zvariable
		VARINQ = CDF_VARINQ(id, var_name)
		
	endif
endfor  ; i

;close cdf file
;--------------
cdf_close,id
dprint,'CDF file ' + file  + ' is closed',dlevel=2  
end